A KMER-based genome-wIde Assocation testing approach on polyploids
QTL-seq pipeline to identify causative mutations responsible for a phenotype
DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.
Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX
R package for random-effect multiple QTL mapping in autopolyploids
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
QTL mapping pipeline (LOD scoring, peak identification) for Palomero et al., "Immune Cell Associations with Cancer Risk", iScience, 2020. Pairs with systematicBNR for pre-processing.
MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets
Pipeline for polymap and QTL Mapping
Scripts of Final Master Project
See https://biometris.github.io/statgenMPP for a full description
Data repository for the paper of the same name.
Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
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