research-software

Open Science is an open-source, local-first, model-agnostic AI research workbench for reproducible scientific research on macOS, Windows, and Linux.

Deterministic, resource-governed per-locus genomics analyses with transactional artifacts, receipts, replay, Arrow, and reproducible sharding.

Netherlands eScience Center Python Template

Relational Workflows: where database schemas define executable data pipelines.

The Simulation and Image Processing for Photonics and Acoustics (SIMPA) toolkit.

A research python package for detecting, categorizing, and assessing the severity of personal identifiable information (PII)

Python library for simulating heat transfer processes

Softcite software mention recognizer, finding mentions and citations to software from within the academic literature

PyTorch research stack for ML multi-factor trading: 213 factors, bias correction, portfolio optimization, and vectorized backtesting.

Free open collaborative qualitative data analysis software

Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations

Research Software Quality Kit - a resource for helping researchers improve the quality of software they write

Python package template for new research software projects

Software Development Guide

Unified Python/CLI time-series decomposition library with native acceleration, multivariate workflows, and machine-readable outputs.

Open-source quantum Agent workspace with a desktop client, Web UI, messaging, Qiskit/MCP tools, and scientific validation

An awesome list of resources for Research Software Engineers and Engineering (RSE)

MATLAB toolkit for Instance Space Analysis: an automated PRELIM-SIFTED-PILOT-CLOISTER-PYTHIA-TRACE pipeline that projects problem instances into a 2D/3D space and builds algorithm footprints to assess and compare algorithmic power. Powers the MATILDA web platform.

GEZHI (格致): a scholar-centered agent architecture for traceable, reviewable, and verifiable empirical social-science research.

pyOpenSci's website. It runs on Hugo via an adaptation of the clean-hugo theme.