rmap

Here are 4 public repositories matching this topic...

gmboowa / rMAP-2.0

This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virulome, as well as pangenome & MLST typing, BLASTn & phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis

docker microbial-genomics variant-calling cromwell modular-design wdl-workflow plasmids phylogenetic-analysis resistome virulome rmap mobilome pangenome-analysis mlst-typing eskapee

Updated Jun 3, 2026
WDL

fr33n0w / rmap-rnode-web-flasher

Star

RNode Web Flasher, super easy and fast flasher now on rmap.world

web flasher rnode rmap webflasher

Updated Aug 5, 2026
JavaScript

gmboowa / nf-rMAP

Star

nf-rMAP: Nextflow-powered microbial genomics pipeline for rapid antimicrobial resistance analysis. Implements rMAP's core functionality with cloud-native scalability, enhanced QC, & modular workflows. Processes Illumina data through assembly, annotation, AMR detection & phylogenetics.

assembly phylogenetics variant-calling rmap bacterial-genomics

Updated May 19, 2025
Nextflow

SocExplorer / SpaceWireZMQ

Star

space spacewire rmap socexplorer

Updated Jan 13, 2021
C++

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