Clone of the Bioconductor repository for the SingleR package.
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Aug 28, 2026 - R
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singler
Here are 12 public repositories matching this topic...
See https://github.com/LTLA/SingleRBook for the latest version of this content.
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Jun 21, 2022 - TeX
The package wrapping the book, for deployment via the Bioconductor build system.
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Mar 21, 2025 - TeX
A web API project built with ASP.NET Core, FastEndpoints, SignalR, EF Core, and Vertical Slice Architecture.
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Dec 9, 2025 - C#
Single-cell RNA-seq analysis of lung cancer (NSCLC) using Seurat, SingleR, and Monocle3. Includes QC, clustering, marker identification, pathway enrichment, and pseudotime analysis.
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Aug 17, 2025 - R
Bioconductor package for automated scRNA-Seq analisys and diagnostics
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May 31, 2026 - R
A single-nucleus RNA-seq reference of the 4-week rat kidney for cell type annotation and label transfer.
bioinformatics rat kidney transcriptomics single-cell-rna-seq celltype seurat cell-annotation snrna-seq singler celltype-annotation celltype-identification
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Apr 6, 2026 - R
Single-cell RNA-seq analysis of human bone marrow and CD34+ cells using Seurat, SingleR, DoubletFinder and CellChat.
bioinformatics scrna-seq r-language single-cell-rna-seq seurat bone-marrow singler cellchat doubletfinder
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Jul 10, 2026 - R
this repository includes scRNA_seq analysis scripts of the data presented in https://www.sciencedirect.com/science/article/pii/S2473952923005608
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Dec 25, 2024
Reproducible benchmark of four scRNA-seq cell type annotation methods (SingleR, CellTypist, ACTINN, scANVI) on PBMC3K
benchmark bioinformatics scrna-seq bioinformatics-analysis scrna-seq-data single-cell-rna-seq single-cell-analysis scrna-seq-analysis single-cell-sequencing pbmc singler actinn scvi-tools pbmc3k celltypist
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Aug 7, 2026 - Jupyter Notebook
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