#

splice-site

Here are 8 public repositories matching this topic...

MAGICS-LAB / DNABERT_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

transcription-factors genome splice dna dataset promoters promoter transcription-factor-binding language-model genome-analysis promoter-analysis transcription-factor-binding-site covid dna-processing splice-site dna-training

Updated Jan 1, 2026
Shell

Kuanhao-Chao / OpenSpliceAI

🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species

deep-learning calibration convolutional-neural-networks transfer-learning residual-networks train-your-own-dataset splice-site splice-site-prediction cryptice cryptic-splicing-prediction

Updated Oct 12, 2026
Python

OluwadareLab / EnsembleSplice

Ensemble Deep Learning for Splice Site Prediction

machine-learning deep-neural-networks deep-learning convolutional-neural-networks rna-seq-analysis splice-site oluwadare-lab

Updated Jan 22, 2024
PureBasic

benniatli / Spliceformer

45k context transformer for splice site prediction implemented with PyTorch.

rna-seq pytorch transformer hard-attention splice-junctions transformer-models splice-site splice-variants splice-site-prediction

Updated Jul 24, 2025
Jupyter Notebook

OluwadareLab / DeepSplicer

DeepSplicer

machine-learning deep-learning dna-sequences deep-convolutional-neural-networks splice-site oluwadare-lab

Updated Dec 17, 2022
Python

nalaekaw / exon_intron

Deep neural network for splice sites prediction

cnn exon splice-junctions intron splice-site

Updated Jun 6, 2022
Jupyter Notebook

OluwadareLab / CNNSplice

CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks

machine-learning deep-learning convolutional-neural-networks rna-seq-analysis splice-site

Updated May 25, 2023
Python

Xu-Lab-WHU / UnusedIndex

Bioinformatic tool to measure the Unused Index of each Splice Site from RNA-seq

rna-seq splice-site

Updated Nov 12, 2020
C++

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