structural-alignments

Neural Networks for Protein Sequence Alignment

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

Development of a structure-driven HMM for the Kunitz domain (PF00014), combining curated 3D alignments and robust statistical evaluation. Project created during the MSc in Bioinformatics at the University of Bologna for the Laboratory of Bioinformatics 1 course.