Structural variation caller using third generation sequencing
-
Updated
Jul 20, 2026 - Python
#
structural-variations
Here are 14 public repositories matching this topic...
Structural variant and indel caller for mapped sequencing data
-
Updated
Oct 11, 2025 - C++
Toolset for SV simulation, comparison and filtering
-
Updated
Dec 1, 2023 - C++
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker mapper next-generation-sequencing alignment long-read pacbio bioconda oxford-nanopore structural-variations
-
Updated
Mar 18, 2024 - C++
Structural variation and indel detection by local assembly
-
Updated
Aug 19, 2026 - C++
Application of pan-genome for population
-
Updated
Oct 26, 2025 - Perl
Pangenome-based structural variation caller
-
Updated
Jan 20, 2026 - Python
novoBreak: local assembly for breakpoint detection in cancer genomes
-
Updated
May 2, 2018 - Perl
Micro DNA identification
-
Updated
Aug 5, 2021 - Shell
A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
-
Updated
Mar 12, 2018 - HTML
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
bioinformatics deep-neural-networks deep-learning genomics structural-variations structural-variation-calling
-
Updated
Oct 26, 2023 - Python
Pipeline for SV detection using 10X genomics data
-
Updated
Oct 8, 2018 - Python
A snakemake pipeline to call structure variants from ONT data
bioinformatics bioinformatics-pipeline structural-variations structural-variants long-read-sequencing structural-variation-calling oxford-nanopore-sequencing
-
Updated
Nov 7, 2025 - Python
Add this topic to your repo
To associate your repository with the structural-variations topic, visit your repo's landing page and select "manage topics."