GRaph-based Analysis of Subcellular/Spatial Proteomics
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Oct 6, 2026 - Python
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subcellular-localization
Here are 9 public repositories matching this topic...
Fine-tuning a pre-trained BERT Model (ProtBert) in PyTorch using DeepLoc Dataset
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Dec 14, 2022 - Python
Support Vector Machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search
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May 12, 2026
Improved method for predicting subcellular localization of eukaryotic proteins
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May 12, 2026
Isoform-resolved subcellular localization of human lncRNAs: gene-level analysis masks compartment-spanning isoforms (dry-only, GTEx + ENCODE). Code for Tani, submitted.
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Jun 9, 2026 - Python
Agent skill to retrieve, analyze, and visualize Human Protein Atlas (HPA) data—featuring 3D subcellular organelle mapping, 10-system anatomical IHC heatmaps, RNA-to-protein concordance, cancer pathology profiling, and standalone HTML5 dashboards.
python bioinformatics rna-seq systems-biology computational-biology data-visualization ensembl gene-ontology proteomics biomarkers ai-agents cell-biology protein-expression immunohistochemistry subcellular-localization human-protein-atlas interactive-dashboard spatial-biology agent-skill cancer-pathology
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Sep 21, 2026 - HTML
CPPLocPred: A method for predicting subcellular location prediction of cell penetrating peptides
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Jun 16, 2026 - Python
NuclQ - an ImageJ plugin to quantify intensity levels by distance to the nuclear membrane.
image-analysis imagej-plugins fiji-plugin fluorescence-microscopy-imaging cell-biology cell-nuclei fluorescence-intensity subcellular-localization
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Sep 14, 2023 - Java
morphological-analysis gaussian-filter edge-analytics haralick-features texture-analysis euler-number subcellular-localization immunofluorescence-microscopy-analysis cellular-protein-morphology zernike-moments numeric-features subcellular-patterns canny-method edge-gradient-intensity-homogeneity edge-direction-homegeneity convex-hull-analytics mahalanobis-distance-classifier grey-level-co-occurrance-matrix harralick-angular-second-moment harralick-difference-entropy
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Sep 13, 2026 - MATLAB
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