A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis
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Sep 6, 2026 - Python
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vfdb
Here are 4 public repositories matching this topic...
Clinical AMR & Virulence Gene Profiling — Klebsiella pneumoniae (CARD/ResFinder Pipeline)
bioinformatics genomics amr whole-genome-sequencing card-database antimicrobial-resistance-genes r-visualizations antimicrobial-resistance clinical-genomics klebsiella-pneumoniae vfdb
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Sep 4, 2026 - Jupyter Notebook
AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.
python bash bioinformatics pipeline genomics reproducible-research conda virulence abricate staphylococcus bacterial-genomics bakta amrfinderplus invasome vfdb
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May 27, 2026 - Python
Free, open-source AMR & virulence gene detection from FASTQ reads — entirely in your browser (KMA + fastp compiled to WebAssembly). No install, no upload.
bioinformatics browser genomics pathogen webassembly amr fastq cabbage kma antimicrobial-resistance virulence-genes vfdb resfinder
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Aug 25, 2026 - JavaScript
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