a python package for finding tandem repeats from genomic sequences
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Jun 11, 2026 - C
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vntr
Here are 12 public repositories matching this topic...
Toolkit for VNTR genotyping and repeat-pan genome graph construction
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Aug 18, 2025 - Python
ATaRVa - Analysis of Tandem Repeat Variation
str tandem-repeats genotype motif-analysis vntr long-read-sequencing methylation-analysis pacbio-sequencing ont-sequencing
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Jul 30, 2026 - Python
tandemtwister: Tandem repeat genotyping tool
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Feb 1, 2026 - C++
A python library for decomposing and visualizing tandem repeat sequences
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May 26, 2026 - Python
Visualizer for Motifs/Methylation in Tandem-Repeat Alleles
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Aug 19, 2026 - JavaScript
MucOneUp simulates diploid MUC1 VNTR references with variable repeats, targeted mutations, and toxic protein detection. It also integrates an Illumina read simulation pipeline for comprehensive genomic benchmarking.
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Apr 24, 2026 - Python
Application for polymorphic SSRs loci identification in genomic sequences
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Sep 17, 2024 - Java
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
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Nov 6, 2017 - Shell
VNtyper Online Backend is a Dockerized pipeline that handles alignment-free MUC1 VNTR genotyping for autosomal dominant tubulointerstitial kidney disease (ADTKD). It exposes a frontend and REST API for job submission, orchestrates asynchronous tasks, and integrates multiple modules to streamline variant analysis for short-read sequencing data.
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Aug 31, 2026 - Shell
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